Other disease systems

Repeated introductions and widespread transmission of human metapneumovirus in Côte d'Ivoire

Kadjo HA, Khan SM, Tamim S, Ar Gouilh M, Adagba M, Adjogoua E, Coulibaly D, Vabret A, Cherry JL, Nelson MI, Trovão NS

BMC Infect Dis · 2025 · 25(1):1092

Molecular characterization of respiratory syncytial viruses circulating in a paediatric cohort in Amman, Jordan

Trovão NS, Khuri-Bulos N, Tan Y, Puri V, Shilts MH, Halpin RA, Fedorova NB, Nelson MI, Halasa N, Das SR

Microb Genom · 2021 · 7(6)

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

Dellicour S, Lequime S, Vrancken B, Gill MS, Bastide P, Gangavarapu K, Matteson NL, Tan Y, du Plessis L, Fisher AA, Nelson MI, Gilbert M, Suchard MA, Andersen KG, Grubaugh ND, Pybus OG, Lemey P

Nat Commun · 2020 · 11(1):5620

Evolution of rotavirus C in humans and several domestic animal species

Trovão NS, Shepherd FK, Herzberg K, Jarvis MC, Lam HC, Rovira A, Culhane MR, Nelson MI, Marthaler DG

Zoonoses Public Health · 2019 · 66(5):546-557

Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building

Nelson MI, Lloyd-Smith JO, Simonsen L, Rambaut A, Holmes EC, Chowell G, Miller MA, Spiro DJ, Grenfell B, Viboud C

Epidemics · 2019 · 26:116-127

Review

Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes

Bose ME, Shrivastava S, He J, Nelson MI, Bera J, Fedorova N, Halpin R, Town CD, Lorenzi HA, Amedeo P, Gupta N, Noyola DE, Videla C, Kok T, Buys A, Venter M, Vabret A, Cordey S, Henrickson KJ

PLoS One · 2019 · 14(7):e0220057

Genetic Diversity of Noroviruses Circulating in a Pediatric Cohort in Bangladesh

Nelson MI, Mahfuz M, Chhabra P, Haque R, Seidman JC, Hossain I, McGrath M, Ahmed AMS, Knobler S, Vinjé J, Ahmed T

J Infect Dis · 2018 · 218(12):1937-1942

The transmission dynamics and diversity of human metapneumovirus in Peru

Pollett S, Trovão NS, Tan Y, Eden JS, Halpin RA, Bera J, Das SR, Wentworth D, Ocaña V, Mendocilla SM, Álvarez C, Calisto ME, Garcia J, Halsey E, Ampuero JS, Nelson MI, Leguia M

Influenza Other Respir Viruses · 2018 · 12(4):508-513

Characterization and evolution of porcine deltacoronavirus in the United States

Homwong N, Jarvis MC, Lam HC, Diaz A, Rovira A, Nelson M, Marthaler D

Prev Vet Med · 2016 · 123:168-174

Feasibility and effectiveness of a brief, intensive phylogenetics workshop in a middle-income country

Pollett S, Leguia M, Nelson MI, Maljkovic Berry I, Rutherford G, Bausch DG, Kasper M, Jarman R, Melendrez M

Int J Infect Dis · 2016 · 42:24-27

Genomic and evolutionary inferences between American and global strains of porcine epidemic diarrhea virus

Jarvis MC, Lam HC, Zhang Y, Wang L, Hesse RA, Hause BM, Vlasova A, Wang Q, Zhang J, Nelson MI, Murtaugh MP, Marthaler D

Prev Vet Med · 2016 · 123:175-184

★ Featured publication

Reassortment in segmented RNA viruses: mechanisms and outcomes

McDonald SM, Nelson MI, Turner PE, Patton JT

Nat Rev Microbiol · 2016 · 14(7):448-60

Review

Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes

Bose ME, He J, Shrivastava S, Nelson MI, Bera J, Halpin RA, Town CD, Lorenzi HA, Noyola DE, Falcone V, Gerna G, De Beenhouwer H, Videla C, Kok T, Venter M, Williams JV, Henrickson KJ

PLoS One · 2015 · 10(3):e0120098

The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models

Grabowski MK, Lessler J, Redd AD, Kagaayi J, Laeyendecker O, Ndyanabo A, Nelson MI, Cummings DA, Bwanika JB, Mueller AC, Reynolds SJ, Munshaw S, Ray SC, Lutalo T, Manucci J, Tobian AA, Chang LW, Beyrer C, Jennings JM, Nalugoda F, Serwadda D, Wawer MJ, Quinn TC, Gray RH, Rakai Health Sciences Program

PLoS Med · 2014 · 11(3):e1001610

Widespread rotavirus H in commercially raised pigs, United States

Marthaler D, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, Nelson M, Ciarlet M

Emerg Infect Dis · 2014 · 20(7):1195-8

Human rhinoviruses and enteroviruses in influenza-like illness in Latin America

Garcia J, Espejo V, Nelson M, Sovero M, Villaran MV, Gomez J, Barrantes M, Sanchez F, Comach G, Arango AE, Aguayo N, de Rivera IL, Chicaiza W, Jimenez M, Aleman W, Rodriguez F, Gonzales MS, Kochel TJ, Halsey ES

Virol J · 2013 · 10:305

Genome sequencing and phylogenetic analysis of 39 human parainfluenza virus type 1 strains isolated from 1997-2010

Beck ET, He J, Nelson MI, Bose ME, Fan J, Kumar S, Henrickson KJ

PLoS One · 2012 · 7(9):e46048

Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010

Rebuffo-Scheer C, Bose M, He J, Khaja S, Ulatowski M, Beck ET, Fan J, Kumar S, Nelson MI, Henrickson KJ

PLoS One · 2011 · 6(10):e25468